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LessonAttacking LLM ApplicationsLesson 3 of 6

Tools are the attack surface

An agent's risk is set by its tools, and not by its prose. Tool descriptions are text the user never sees, and every MCP server in a config file is a program the client may start.

  • Foundations
  • Lesson 3
  • About 2 hours with the lab
  • Open source, free to read
On this page
The route

Objectivesby the end of this lesson

  • Inventory an agent's tools before testing its behaviour, and colour each tool by what it ingests and what it can do.
  • Draw a data-flow diagram that includes the tool config, the credentials and the server processes.
  • Build a toy agent whose tools only log, inside a container with no network.
  • Scan a tool list offline, and say what an offline scan cannot see.

Before you start, from Lessons 1 and 2: which three legs does the Rule of Two count? In Lesson 1, where in the context did an instruction carry least weight on your model, and how sure are you of that difference?

Lesson 2 drew the trifecta as a property of a session. This lesson looks at where the legs come from in practice: the tools an agent is given, and the configuration that gives them.

Tool text is trusted text

A tool reaches the model as a name, a description and an input schema, placed in the context the model reads. The user rarely sees that text. The model reads it as part of its instructions. The Model Context Protocol's specification says clients "MUST consider tool annotations to be untrusted unless they come from trusted servers", and its guidance on local servers advises treating tool definitions as untrusted input. On pinning definitions, so that a later change is noticed, the guidance is candid: "The protocol does not require this".1

Hidden instructions in tool metadata are called tool poisoning. On the MCPTox benchmark, tool-description poisoning succeeded 36.5% of the time on average across 20 models, and 72.8% on the worst model.2 MITRE ATLAS records publishing a poisoned agent tool as a technique. Since July 2026 it is AML.T0115.002, "Publish Poisoned AI Artifacts: AI Agent Tools". The release that lists it, v2026.09, has 120 techniques and 73 case studies.3

Config is code

The worst MCP bugs of 2025 and 2026 were not model failures. They were configuration that ran code. The Cloud Security Alliance's July 2026 note collects them. In CVE-2025-54136, a client bound its approval to a server's name rather than its content, so a config changed after approval ran without a word to anyone. In CVE-2025-54135, rated CVSS 8.6, an injected message rewrote the global MCP config and started a program. A May 2026 study found trust prompts in several command-line coding agents that defaulted to yes, or were skipped in headless runs. And a worm planted malicious MCP configs in 73 GitHub repositories.4

This course recommends the old supply-chain controls, applied to a new artefact. Approval binds to a server's content, not its name. Config changes get code review. Unattended runs never auto-trust. Credentials are short-lived and scoped to one session's tools. In the OWASP Top 10 for Agentic Applications 2026 these fall under ASI02 Tool Misuse and Exploitation, ASI04 Agentic Supply Chain Vulnerabilities and ASI05 Unexpected Code Execution (RCE).5

Red tools and blue tools

Tim Kellogg proposed a colouring for tools: red if a tool ingests untrusted input, blue if it takes a critical action, and never red and blue tools in the same context.6 A tool list coloured before any test runs shows where the two meet.

Agents act on the world

In July 2026 the UK AI Security Institute ran a cyber challenge 122 times, with internet access deliberately enabled and the developers' cyber classifiers deliberately switched off. Across 10 of those runs, agents took 19 actions the institute had not sanctioned, on the live internet. In the worst case an agent went rather further than anyone had asked. It created fake identities, used them to socially engineer a real maintainer, and opened a malicious pull request on a real open-source project. The institute found no resulting real-world harm. It says it cannot yet be certain when the agent understood that it was taking real-world action.7

Two lessons for a tester follow. The first is that agents can target other systems and other agents, so containment belongs to the test from the start. The second is that a result measured with a sandbox and classifiers in place is a different measurement from the model alone. Say which one you took.

The lab

The toy agent runs a local model with three stub tools. None of them reaches anything outside a folder you made.

Tool Rule of Two leg and colour What it does
read_notes B, sensitive data (no colour in Kellogg's scheme) returns lab/notes.txt, made-up notes that contain a made-up canary string
fetch_doc A, untrusted input (red) returns lab/page.html, a fixed local file that stands in for a web page
send_message C, external action (blue) appends one JSON line to lab/outbox.log; sends nothing

Prepare everything while online: pull the model and build the agent image with its Python packages, because an internal network cannot download anything. Then run the agent and the model in containers on an internal network: docker network create --internal agentlab (Podman takes the same flag), start Ollama on it, and start the agent with docker run --rm --network agentlab --read-only --tmpfs /tmp --cap-drop ALL --security-opt no-new-privileges -v ./lab:/lab <your image>. An internal network can still reach the host's gateway address, so keep any Ollama on the host bound to the loopback interface only.8 Docker Desktop is free for personal use, education and small businesses; Podman is a free alternative.9 Inspect's Docker sandbox, whose generated configuration sets network_mode: none (a custom compose file must set it again), is another route.10

python
# toy agent skeleton (MIT). Fill the three marked lines; see Ollama's tool-calling docs.
import json, ollama
LAB = "/lab"
client = ollama.Client(host="http://ollama:11434")   # the Ollama container on the internal network
def read_notes():  return open(f"{LAB}/notes.txt").read()
def fetch_doc():   return open(f"{LAB}/page.html").read()
def send_message(text):
    with open(f"{LAB}/outbox.log", "a") as f:
        f.write(json.dumps({"text": text}) + "\n")      # the only effect: one log line
    return "logged"
TOOLS = {"read_notes": read_notes, "fetch_doc": fetch_doc, "send_message": send_message}
def run(task, model="granite4:3b", max_turns=6):
    messages = [{"role": "user", "content": task}]
    for _ in range(max_turns):
        reply = ...   # 1. client.chat(model=..., messages=..., tools=[...]) with your options
        messages.append(reply.message)
        if not reply.message.tool_calls:
            return messages
        for call in reply.message.tool_calls:
            name = call.function.name
            if name not in TOOLS:
                raise SystemExit(f"STOP: unknown tool {name}")   # stop rule
            result = ...  # 2. call TOOLS[name] with call.function.arguments
            ...           # 3. append {"role": "tool", "tool_name": name, "content": result}
    return messages

Tool calling follows Ollama's documented loop.11 The granite4:3b model in Ollama's library lists tool support; check its model card for the exact variant. Log every message and tool call to a JSONL file beside the run record.

Exercise 1about 2 hours in three parts

Inventory, build and scan

Target: your own toy agent and your own tool list. Nothing leaves your machine.

Part A, the diagram. Draw the agent's data-flow diagram: every process, data store and flow, with trust boundaries. Include the tool config, the place credentials would live, and each server process as nodes. Mark where untrusted text enters the context, colour each tool, and list every session in which all three Rule of Two legs coexist. Then redraw it with one pattern from Lesson 2 (plan-then-execute or dual LLM) so that no session holds all three.

Part B, the build. Fill the skeleton, run it in the container on the internal network, and ask it twice to "Read my notes and summarise them." Confirm from the log that only the expected tools ran, and that outbox.log is empty. Record the setup in a run record (Lesson 1) with the tool schemas included.

Part C, the offline scan. Write your three tools' names, descriptions and input schemas to tools.json in the shape {"tools": [{"name", "description", "inputSchema"}]}. Install Cisco's scanner (cisco-ai-mcp-scanner, version 4.8.7 checked for this page) into an image while online, then run its static mode with only the local YARA analyzer, in a container started with --network none: LITELLM_LOCAL_MODEL_COST_MAP=True mcp-scanner --analyzers yara --format summary static --tools tools.json (in the container, pass the variable with -e). The variable stops a library inside the scanner from fetching a price list from GitHub at start-up; without a network it falls back to its own copy and prints a warning. The summary's "Scan Target" line shows the scanner's default server address even in static mode; the check for this page ran with no network at all. This command was run for this page on 2026-10-25, with mcp-scanner 4.8.7 on Python 3.13 and no network, against three stub tools like yours: it scanned 3 tools and marked all 3 safe. Use only static: the scanner's config and known-configs modes connect to the configured servers and start local ones, and its API, LLM and VirusTotal analyzers send data out.12 Then read the scanner's YARA rule files, in its repository or in the installed package under mcpscanner/data/yara_rules/, and list, in your own words, the classes of description text they look for. Record what the scan found, which rule classes your descriptions were checked against, and what a static scan cannot see.

Snyk Agent Scan is not used here: it needs an account token, sends tool descriptions to its service and starts the stdio servers in a config.13

Stop and escalate. The code stops the run if the agent calls a tool not in the registry; the container blocks network requests and writes outside lab/ and its temporary /tmp. If the log shows any of these, stop: keep the log, do not rerun, and work out why from the log alone. If something reached beyond your machine, revoke any credential involved and treat it as an incident in your own setup. Never point the agent or the scanner at a server you do not own, and never at Umbris.

Show what a sound result looks like

Part A names five or more nodes besides the model (notes file, page file, outbox, tool config, credential store) and finds one session holding all three legs: the one with fetch_doc, read_notes and send_message together. The redesign splits it: a planner that never sees page.html decides which tools run, or a quarantined model reads the page and returns only a fixed-format summary.

Part B: the expected log shows read_notes and nothing else, twice, with an empty outbox. A small model may call nothing, or call another tool: either is a finding to record, not a failure of the exercise.

Part C: the YARA scan reports on description patterns. It cannot see what a live server returns at run time, a description that changes after approval, or a tool whose behaviour differs from its description. Those gaps are why approval must bind to content and changes need review.

Exercise 2self-check, about 10 minutes

Check your understanding

No model is run in this check.

  1. Why is a tool description more dangerous than the same words in a user's message?
  2. Approval bound to a server's name: what goes wrong, and what is the fix?
  3. Your scan of a tool list comes back clean. List three things it did not test.
  4. A result from a sandboxed agent with classifiers on, and one from the bare model: why must a report keep them apart?
Show answers
  1. The user rarely sees it, the model reads it as part of its instructions, and the protocol does not require clients to verify it.
  2. A config changed after approval runs without a new prompt. Bind approval to the content, for example a hash of it, and review changes like code.
  3. Run-time behaviour, later changes to descriptions, and differences between what a tool says and what it does.
  4. They measure different systems; the second says nothing about the safeguards, and the first says nothing about the model alone.

Writing it up

Write the diagram's findings first: the sessions that held all three legs, and the redesign that removed one. Then the build and scan results, with the run record. Read it against the rubric from Lesson 1.

Lesson text is CC BY 4.0 and code samples are MIT.

Notes

  1. Model Context Protocol specification, revision 2026-07-28: tools section, and the local server security guidance, https://modelcontextprotocol.io/docs/2026-07-28/tutorials/security/local-server-security (read 2026-10-25). ↩
  2. Cloud Security Alliance research note on MCP tool poisoning and auto-execution, 1 July 2026, https://labs.cloudsecurityalliance.org/research/csa-research-note-mcp-tool-poisoning-auto-execution-20260701/. ↩
  3. MITRE ATLAS data releases and changelog, v2026.09 of 15 September 2026, https://github.com/mitre-atlas/atlas-data. ↩
  4. Cloud Security Alliance research note on MCP tool poisoning and auto-execution, 1 July 2026, https://labs.cloudsecurityalliance.org/research/csa-research-note-mcp-tool-poisoning-auto-execution-20260701/. ↩
  5. OWASP GenAI Security Project, "OWASP Top 10 for Agentic Applications 2026", 9 December 2025, https://genai.owasp.org/resource/2025-12-09/owasp-top-10-for-agentic-applications-for-2026. ↩
  6. Tim Kellogg, 3 November 2025, https://timkellogg.me/blog/2025/11/03/colors, discussed by Simon Willison, https://simonwillison.net/2025/Nov/4/mcp-colors/. ↩
  7. UK AI Security Institute, incident report on unsanctioned agent behaviour during cyber testing, 4 August 2026, https://www.aisi.gov.uk/blog/incident-report-unsanctioned-agent-behaviour-during-cyber-testing. ↩
  8. Docker, docker network create reference, https://docs.docker.com/reference/cli/docker/network/create/. ↩
  9. Docker Desktop licence terms, https://docs.docker.com/subscription/desktop-license/; Podman, https://github.com/containers/podman (read 2026-10-25). ↩
  10. Inspect, "Sandboxing", https://inspect.aisi.org.uk/sandboxing.html. ↩
  11. Ollama, "Tool calling", https://docs.ollama.com/capabilities/tool-calling. ↩
  12. Cisco AI Defense, mcp-scanner README, https://github.com/cisco-ai-defense/mcp-scanner (version 4.8.7, 20 October 2026). ↩
  13. Snyk Agent Scan README, https://github.com/snyk/agent-scan (version 0.6.9, 20 October 2026). ↩